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Academician

ABDULKADİR KOÇAK

Doçent

Gebze Teknik Üniversitesi Temel Bilimler Fakültesi Kimya Bölümü

Research topics OpenAlex
  1. Ana Dal Fen Bilimleri ve Matematik Temel Alanı
  2. Yan Dal Kimya
Keywords YÖKSİS
Articles 31 YÖKSİS 31 · OpenAlex 0 Total citations 481 h-index 15 · OpenAlex OpenAlex coverage %100 matched 31 / 31 Q1 articles 15 Scopus · WoS Q1 6 Best field rank #144 / 836 Keyword · top 17.2% Co-authors 39 5 Turkish institutions

Citation impact

Citation counts of the articles matched in OpenAlex, citing publications from Crossref and the Stanford/Elsevier list. Sources are shown separately and never added up.

OpenAlex YÖKSİS articles matched in OpenAlex: 31
h-index 15 Percentile in Türkiye: 94 #67 of 617 at their university by h-index
i10-index
20
Total citations
481
Top 12% in Türkiye
Per article
15.5
FWCI
1.22
1.00 = world average
World top 1%
0
World top 10%
2

Most cited articles

  1. Accurate Binding Free Energy Method from End-State MD Simulations 2022 world top 10% 57 citations
  2. Computational insights into the protonation states of catalytic dyad in BACE1–acyl guanidine based inhibitor complex 2016 38 citations
  3. Dissociation Energy and Electronic and Vibrational Spectroscopy of Co H2O and Its Isotopomers 2013 33 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. h-index on the OpenAlex author profile: 16.

Citing publications Crossref 68 publications citing 31 DOI-bearing articles · 13 Türkiye-affiliated
  • 2018 1
  • 2019 15
  • 2020 13
  • 2021 14
  • 2022 8
  • 2025 13
  • 2026 4
  1. DOI 10.1016/j.saa.2025.127163 2026
  2. DOI 10.1016/j.ccr.2025.217261 2026
  3. DOI 10.1016/b978-0-443-29815-8.00001-x 2026
  4. DOI 10.1016/j.saa.2025.127033 2026
  5. Data-Efficient Equivariant NNPs Enable DFT-Accurate Simulations and Implicit Solvation Free Energies TR Esma Mutlu et al. · The Journal of Physical Chemistry B · 2025 · cites 10 articles of this academic
  6. DOI 10.1021/acs.jctc.5c01464 2025
  7. DOI 10.1557/s43580-025-01462-x 2025
  8. DOI 10.1007/s11030-025-11419-9 2025
  9. DOI 10.1515/9783111681870-001 2025
  10. DOI 10.1002/slct.202504569 2025
  11. DOI 10.1063/5.0260078 2025
  12. DOI 10.1016/j.tem.2025.09.011 2025
  13. DOI 10.1039/d5dd00321k 2025
  14. DOI 10.1002/slct.202503247 2025
  15. DOI 10.1021/acs.jctc.5c01191 2025
  16. DOI 10.1016/j.foodres.2025.117798 2025
  17. DOI 10.1093/bbb/zbaf181 2025
  18. Dimethoxyindoles based thiosemicarbazones as multi-target agents; synthesis, crystal interactions, biological activity and molecular modeling TR Minhal Yıldız et al. · Bioorganic Chemistry · 2022 · cites 5 articles of this academic
  19. Synthesis of 7-azaindole based carbohydrazides and 1,3,4-oxadiazoles; Antioxidant activity, α-glucosidase inhibition properties and docking study TR Samet Izgi et al. · Journal of Molecular Structure · 2022 · cites 5 articles of this academic
  20. Molecular dynamics simulations reveal the plausible agonism/antagonism mechanism by steroids on androgen receptor mutations TR Abdulkadir Kocak et al. · Journal of Molecular Graphics and Modelling · 2022 · cites 4 articles of this academic
  21. DOI 10.1002/adma.202107212 2022
  22. DOI 10.1016/j.molstruc.2022.132427 2022
  23. DOI 10.1021/acs.jpca.1c10012 2022
  24. DOI 10.1002/aoc.6614 2022
  25. DOI 10.1111/cbdd.14008 2022
  26. Interaction of water soluble cationic gallium(III) phthalocyanines with different G-quadruplex DNAs TR Hasan Emre Yılmaz et al. · Polyhedron · 2021 · cites 2 articles of this academic
  27. DOI 10.1080/10408398.2021.1937510 2021
  28. DOI 10.1016/j.bpc.2020.106536 2021
  29. DOI 10.1002/mas.21726 2021 · cites 3 articles of this academic
  30. DOI 10.1021/jasms.1c00177 2021

Showing the 30 most recent.

Where does this list come from?

Extracted from the reference lists in Crossref’s public March 2026 data file; 20.3% of the file has been processed, so the list may be incomplete. Crossref citations are never added to or compared with the OpenAlex citation counts; the two sources have different coverage.

Field ranking

Position in the main-field, side-field and keyword cohorts by YÖKSİS article score; each card opens that ranking.

YÖKSİS ?
Keyword rankings 3

Works 31

YÖKSİS and OpenAlex records: index distribution, journals published in, a filterable article list and the other output types.

Indexes and citation percentiles

?
TR Index 1 articles
OpenAlex citation percentile
Top 1%0
Top 10%2
Avg · n 31 %70.0
Other counts

Scopus (SJR)

  • YÖKSİS rows 31

WoS (JCR)

  • YÖKSİS rows 29

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

31articles

Journals with publications

20 journals

Narrow down

Scopus (SJR)
Q115 Q212 Q32 Q42
WoS (JCR)
Q16 Q215 Q38 Q40
TR Index
1articles

Article list

  1. 2025 Modeling Gas Adsorption and Mechanistic Insights into Flexibility in Isoreticular Metal–Organic Frameworks Using High-Dimensional Neural Network Potentials Langmuir DOI 10.1021/acs.langmuir.4c04578 YÖKSİS SJR Q1 JCR Q2 OpenAlex top 10% OpenAlex 94.3%
  2. 2025 Data-Efficient Equivariant NNPs Enable DFT-Accurate Simulations and Implicit Solvation Free Energies The Journal of Physical Chemistry B DOI 10.1021/acs.jpcb.5c05891 YÖKSİS SJR Q1 JCR Q2 OpenAlex 16.7%
  3. 2025 DeepConf: Leveraging ANI-ML Potentials for Exploring Local Minima with Application to Bioactive Conformations Journal of Chemical Information and Modeling DOI 10.1021/acs.jcim.4c02053 YÖKSİS SJR Q1 JCR Q1 OpenAlex 89.7%
  4. 2024 Benchmarking ANI potentials as a rescoring function and screening FDA drugs for SARS-CoV-2 Mpro Journal of Computer-Aided Molecular Design DOI 10.1007/s10822-024-00554-4 YÖKSİS SJR Q2 JCR Q2 OpenAlex 84.6%
  5. 2024 Exploring potential Plasmodium kinase inhibitors: a combined docking, MD and QSAR studies Journal of Biomolecular Structure and Dynamics DOI 10.1080/07391102.2023.2249111 YÖKSİS SJR Q2 JCR Q3 OpenAlex 64.4%
  6. 2024 Exploring epigenetic drugs as potential inhibitors of SARS-CoV-2 main protease: a docking and MD simulation study Journal of Biomolecular Structure and Dynamics DOI 10.1080/07391102.2023.2236714 YÖKSİS SJR Q2 JCR Q3 OpenAlex 61.5%
  7. 2023 The performance of ANI-ML potentials for ligand-n(H2O) interaction energies and estimation of hydration free energies from end-point MD simulations JOURNAL OF COMPUTATIONAL CHEMISTRY DOI 10.1002/jcc.27022 YÖKSİS SJR Q2 JCR Q2 OpenAlex 50.3%
  8. 2023 Revisiting MMPBSA by Adoption of MC-Based Surface Area/Volume, ANI-ML Potentials, and Two-Valued Interior Dielectric Constant JOURNAL OF PHYSICAL CHEMISTRY B DOI 10.1021/acs.jpcb.3c00834 YÖKSİS SJR Q1 JCR Q3 OpenAlex 81.7%
  9. 2023 Computational analysis of substrate recognition of Sars-Cov-2 Mpro main protease Computational Biology and Chemistry DOI 10.1016/j.compbiolchem.2023.107960 YÖKSİS SJR Q2 JCR Q2 OpenAlex 79.7%
  10. 2022 Accurate Binding Free Energy Method from End-State MD Simulations JOURNAL OF CHEMICAL INFORMATION AND MODELING DOI 10.1021/acs.jcim.2c00601 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 94.2%
  11. 2022 A neural network potential for the IRMOF series and its application for thermal and mechanical behaviors PHYSICAL CHEMISTRY CHEMICAL PHYSICS DOI 10.1039/d1cp05973d YÖKSİS SJR Q1 JCR Q2 OpenAlex 78.3%
  12. 2022 Molecular dynamics simulations reveal the plausible agonism/antagonism mechanism by steroids on androgen receptor mutations JOURNAL OF MOLECULAR GRAPHICS & MODELLING DOI 10.1016/j.jmgm.2021.108081 YÖKSİS SJR Q2 JCR Q2 OpenAlex 84.5%
  13. 2021 Experimental and theoretical investigation of water-soluble silicon(IV) phthalocyanine and its interaction with bovine serum albumin JBIC Journal of Biological Inorganic Chemistry DOI 10.1007/s00775-021-01848-w YÖKSİS SJR Q1 JCR Q1 OpenAlex 56.3%
  14. 2021 Investigation of Binding behaviour of a water-soluble gallium (III) phthalocyanine with double-stranded and G-quadruplex DNA via experimental and computational methods Journal of Molecular Structure DOI 10.1016/j.molstruc.2021.130536 YÖKSİS SJR Q2 JCR Q3 OpenAlex 71.8%
  15. 2020 In Silico Investigation into H-2 Uptake in MOFs: Combined Text/Data Mining and Structural Calculations LANGMUIR DOI 10.1021/acs.langmuir.9b03618 YÖKSİS SJR Q1 JCR Q2 OpenAlex 59.9%
  16. 2019 HBGA binding modes and selectivity in noroviruses upon mutation: a docking and molecular dynamics study JOURNAL OF MOLECULAR MODELING DOI 10.1007/s00894-019-4261-7 YÖKSİS SJR Q3 JCR Q3 OpenAlex 78.7%
  17. 2019 Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking Human Immunoglobulin A Antibody and Escape Mechanism in Noroviruses Upon Mutation JOURNAL OF COMPUTATIONAL BIOLOGY DOI 10.1089/cmb.2018.0163 YÖKSİS SJR Q2 JCR Q3 OpenAlex 57.0%
  18. 2019 Computational Interrogation of The Human Norovirus-Host Cell Interactions Facilitated by A-Type Antigen Sakarya University Journal of Science DOI 10.16984/saufenbilder.525430 YÖKSİS SJR Q4 OpenAlex 9.6%
  19. 2019 Molecular Dynamics Studies of the Norovirus-Host Cell Interaction Mediated by H-type 1 Antigen Trakya University Journal of Natural Sciences DOI 10.23902/trkjnat.508120 YÖKSİS SJR Q4 OpenAlex 45.9%
  20. 2018 Experimental and theoretical studies of carbazole based Schiff base as a fluorescent Fe3 probe TURKISH JOURNAL OF CHEMISTRY DOI 10.3906/kim-1605-35 YÖKSİS TR Index SJR Q3 JCR Q3 OpenAlex 51.4%

Projects 2

  1. 2023 Ani-Ml Potansiyellerinin Protein-Peptid Bağlanma Enerjisine Uygulanabilirliğinin Test Edilerek SARS-CoV-2 Mpro Substrat Etkileşimlerinin Bağlanma Enerjilerinin Hesapsal Olarak Belirlenmesi -Tübitak 1002 · Tamamlandı 2023-02-01 – 2023-10-01
  2. 2021 Yapay zekâ metotlarının klasik moleküler dinamik ve kenetlenme yöntemleriyle kombine edilerek serbest enerji hesaplamaları -Tübitak 3501 · Tamamlandı 2021-01-15 – 2023-03-15

Proceedings 13 See all (13) →

  1. 2018 Computational investigation on the escape mechanism and fitness cost of noroviruses upon mutations 6th International BAU Drug Design Congress
  2. 2021 SOLVATION FREE ENERGY CALCULATIONS OF SMALL ORGANIC COMPOUNDS: A COMBINED ML AND MD METHOD 8th International Applied Sciences Congress
  3. 2023 9th International BAU Drug Design Congress 9th International BAU Drug Design Congress
  4. 2010 Electronic Spectroscopy and Vibrationally Mediated Photodissociation of Co H2O Co D2O and Co HOD 65th OSU International Symposium on Molecular Spectroscopy
  5. — GTÜ Lisansüstü araştırmalar sempozyumu GTÜ Lisansüstü araştırmalar sempozyumu

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Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
39
With an akaturk profile
12
Turkish institutions
5
Co-authored works
%97

Academic co-authors 12

  1. YUNUS ZORLU Profesör · Gebze Teknik Üniversitesi same university 5
  2. MAHMUT DURMUŞ Profesör · Gebze Teknik Üniversitesi same university 2
  3. BÜNYEMİN ÇOŞUT Profesör · Gebze Teknik Üniversitesi same university 1
  4. EFKAN BAĞDA Profesör · Sivas Cumhuriyet Üniversitesi 1
  5. ESRA BAĞDA Profesör · Sivas Cumhuriyet Üniversitesi 1
  6. ESRA NUR KAYA Öğretim Görevlisi · Gebze Teknik Üniversitesi same university 1
  7. HAKAN KANDEMİR Profesör · Tekirdağ Namık Kemal Üniversitesi 1
  8. HATİCE CAN Profesör · Karamanoğlu Mehmetbey Üniversitesi 1
  9. SELCEN ÇELİK UZUNER Profesör · Karadeniz Teknik Üniversitesi 1
  10. SÜREYYA OĞUZ TÜMAY Doçent · Atatürk Üniversitesi 1
Show all (12)
  1. UĞUR UZUNER Doçent · Karadeniz Teknik Üniversitesi 1
  2. İBRAHİM FAZIL ŞENGÜL Profesör · Gebze Teknik Üniversitesi same university 1

National collaboration 5 institutions

Within own university7 joint works · Gebze Teknik Üniversitesi

  1. Atatürk Üniversitesi 1 works · 1 academics
  2. Karadeniz Teknik Üniversitesi 1 works · 2 academics
  3. Karamanoğlu Mehmetbey Üniversitesi 1 works · 1 academics
  4. Sivas Cumhuriyet Üniversitesi 1 works · 2 academics
  5. Tekirdağ Namık Kemal Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 27

Muslum Yildiz 11Ömer Tayfuroğlu 9Ricardo Metz 7Ebru Akkuş 4Christopher Copeland 2Daluz Jennifer Silva 2Gokhan Altinay 2Hakan Yilmaz 2Mehmet Serdar KOCA 2Muhammad Affawn Ashraf 2Selonou Gautier Kankinou 2Wright L Pearson 2Zachary Sallese 2İrem Nur ZENGİN 2Alexandra R McEnroeAndac OmerEsma MutluGeoff Austein-MillerHilal Sena TASCIKhaoula KhezamiMaowulidan DilimulatiMichael D JohnstonMuberra AndacMütesir TEMELOzlem FaizShaya Y. Al-Raqaismail erol

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.