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Academician

PEMRA ÖZBEK SARICA

Profesör

Marmara Üniversitesi Mühendislik Fakültesi Biyomühendislik Bölümü

Research topics OpenAlex
  1. Ana Dal Mühendislik Temel Alanı
  2. Yan Dal Biyomühendislik
Keywords YÖKSİS
Articles 46 YÖKSİS 46 · OpenAlex 0 Total citations 809 h-index 13 · OpenAlex OpenAlex coverage %87 matched 39 / 45 Q1 articles 18 Scopus · WoS Q1 14 Best field rank #1,434 / 24,860 Main field · top 5.8% Co-authors 184 15 Turkish institutions

Citation impact

Citation counts of the articles matched in OpenAlex, citing publications from Crossref and the Stanford/Elsevier list. Sources are shown separately and never added up.

OpenAlex YÖKSİS articles matched in OpenAlex: 39 + YÖKSİS · co-author record: 6
h-index 13 Percentile in Türkiye: 91 #182 of 2,222 at their university by h-index
i10-index
17
Total citations
809
Top 7.4% in Türkiye
Per article
18.0
FWCI
1.12
1.00 = world average
World top 1%
0
World top 10%
5

Most cited articles

  1. Community wide assessment of protein interface modeling suggests improvements to design methodology 2011 world top 10% 136 citations
  2. gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations 2018 world top 10% 132 citations
  3. New Machine Learning Applications to Accelerate Personalized Medicine in Breast Cancer: Rise of the Support Vector Machines 2020 world top 10% 106 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. 6 articles (77 citations) tagged with this academic’s YÖK author id in co-authors’ YÖKSİS records count only towards citations, h-index and i10; article counts, percentiles and rankings use their own YÖKSİS list.

Citing publications Crossref 130 publications citing 39 DOI-bearing articles · 23 Türkiye-affiliated
  • 2018 3
  • 2019 29
  • 2020 31
  • 2021 40
  • 2022 18
  • 2025 8
  • 2026 1
  1. DOI 10.1016/j.ejmech.2025.118365 2026
  2. Hydration‐coupled allosteric locking of a phenol‐ and zinc‐free bioactive insulin analog TR Esra Ayan et al. · The FEBS Journal · 2025
  3. Spectroscopic and Docking Investigation of Pepsin Interaction With PET Micro‐ and Nanoplastics TR Hasan Saygin et al. · ChemistrySelect · 2025 · cites 2 articles of this academic
  4. DOI 10.1016/j.ijbiomac.2025.148553 2025
  5. DOI 10.1038/s41575-025-01150-z 2025
  6. DOI 10.1101/2025.10.27.684880 2025
  7. DOI 10.1128/aac.01099-25 2025
  8. DOI 10.1109/aibthings66987.2025.11296237 2025
  9. DOI 10.1016/j.ejim.2025.106613 2025
  10. Modeling the Dynamics of Protein–Protein Interfaces, How and Why? TR Ezgi Karaca et al. · Molecules · 2022
  11. Exploring species-specific inhibitors with multiple target sites on S. aureus pyruvate kinase using a computational workflow TR Merve Yuce et al. · Journal of Biomolecular Structure and Dynamics · 2022
  12. Evaluation of hereditary/familial breast cancer patients with multigene targeted next generation sequencing panel and MLPA analysis in Turkey TR Elcin Bora et al. · Cancer Genetics · 2022
  13. DOI 10.1016/j.sbi.2022.102334 2022
  14. DOI 10.1016/j.csbj.2021.12.044 2022
  15. DOI 10.1016/j.eswa.2022.116729 2022
  16. DOI 10.1007/s43681-022-00135-x 2022
  17. DOI 10.1371/journal.pone.0265194 2022
  18. DOI 10.1002/wcms.1602 2022
  19. DOI 10.1101/2022.02.07.479254 2022
  20. DOI 10.1016/j.jmgm.2021.108087 2022
  21. DOI 10.1021/acs.jcim.2c00025 2022
  22. DOI 10.1016/j.sbi.2022.102336 2022
  23. DOI 10.1016/bs.mcb.2022.02.001 2022
  24. DOI 10.1007/s10822-021-00438-x 2022
  25. DOI 10.3389/fcell.2022.844844 2022
  26. DOI 10.1109/tcbb.2021.3123828 2022
  27. DOI 10.1016/j.jgo.2021.12.008 2022
  28. In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review TR Metin Yazar et al. · OMICS: A Journal of Integrative Biology · 2021
  29. Repurposing of FDA ‐approved drugs against active site and potential allosteric drug‐binding sites of COVID ‐19 main protease TR Merve Yuce et al. · Proteins: Structure, Function, and Bioinformatics · 2021 · cites 2 articles of this academic
  30. Normal Mode Analysis of KRas4B Reveals Partner Specific Dynamics TR Meryem Eren et al. · The Journal of Physical Chemistry B · 2021

Showing the 30 most recent.

Where does this list come from?

Extracted from the reference lists in Crossref’s public March 2026 data file; 20.3% of the file has been processed, so the list may be incomplete. Crossref citations are never added to or compared with the OpenAlex citation counts; the two sources have different coverage.

Field ranking

Position in the main-field, side-field and keyword cohorts by YÖKSİS article score; each card opens that ranking.

YÖKSİS ?
Keyword rankings 1

Works 46

YÖKSİS and OpenAlex records: index distribution, journals published in, a filterable article list and the other output types.

Indexes and citation percentiles

?
TR Index 2 articles
OpenAlex citation percentile
Top 1%0
Top 10%4
Avg · n 41 %65.0
Other counts

Scopus (SJR)

  • YÖKSİS rows 44

WoS (JCR)

  • YÖKSİS rows 44

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

46articles

Journals with publications

29 journals

Narrow down

Scopus (SJR)
Q118 Q219 Q35 Q41
WoS (JCR)
Q114 Q220 Q39 Q40
TR Index
2articles

Article list

  1. 2025 Spectroscopic and Docking Investigation of Pepsin Interaction With PET Micro‐ and Nanoplastics ChemistrySelect DOI 10.1002/slct.202504204 YÖKSİS SJR Q3 JCR Q3 OpenAlex 58.0%
  2. 2025 Elucidating the leaching effect of micro-/nano-plastics on the binding, structural, and oxidative characteristics of bovine serum albumin and its impact on cytotoxicity and oxidative stress in the human lung cancer cell line A549 ENVIRONMENTAL SCIENCE-NANO DOI 10.1039/d5en00071h YÖKSİS SJR Q1 JCR Q2 OpenAlex 87.5%
  3. 2025 Attenuation of Type IV pili activity by natural products JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS DOI 10.1080/07391102.2024.2310781 2 YÖKSİS records YÖKSİS SJR Q2 JCR Q3 OpenAlex 56.5%
  4. 2025 Antivirulence therapy: type IV pilus as a druggable target for bacterial infections Medicinal Chemistry Research DOI 10.1007/s00044-024-03338-5 YÖKSİS SJR Q2 JCR Q2 OpenAlex 73.5%
  5. 2025 Understanding the PET micro/nanoplastics as an environmental stressor on pancreatin enzyme: leaching and binding characterization by multi-spectroscopic and molecular docking examination, and the resulting impact on Escherichia coli Nanotoxicology DOI 10.1080/17435390.2025.2544587 YÖKSİS SJR Q2 JCR Q2 OpenAlex 78.7%
  6. 2025 Multi-approach study on diethylhexyl phthalate and monoethylhexyl phthalate binding to lysozyme: In silico, bioactivity and surface plasmon resonance analyses Toxicology Letters DOI 10.1016/j.toxlet.2025.04.005 YÖKSİS SJR Q2 JCR Q2 OpenAlex 74.4%
  7. 2025 Can We Develop Glioma Subtype-Specific Precision Medicines? An Integrative Machine Learning Pipeline for Biomarker Discovery and Drug Repurposing for Glioblastoma and Low-Grade Glioma OMICS: A Journal of Integrative Biology DOI 10.1177/15578100251408278 YÖKSİS SJR Q3 JCR Q3 OpenAlex 57.7%
  8. 2025 Elucidation of the Binding Interaction between β‐Sitosterol and Lysozyme using Molecular Docking, Molecular Dynamics and Surface Plasmon Resonance Analysis Chemistry & Biodiversity DOI 10.1002/cbdv.202401470 YÖKSİS SJR Q2 JCR Q3 OpenAlex 60.2%
  9. 2025 Binding Affinity and Interaction Mechanism of Chlorhexidine with Lysozyme: Insights from Surface Plasmon Resonance, Molecular Docking, and Molecular Dynamics Simulations ChemistrySelect DOI 10.1002/slct.202405476 YÖKSİS SJR Q3 JCR Q3 OpenAlex 71.8%
  10. 2025 Exploring the bifunctionality of aminotransferases in the arogenate route of l -tyrosine synthesis Journal of Biomolecular Structure and Dynamics DOI 10.1080/07391102.2025.2600483 YÖKSİS SJR Q2 JCR Q3 OpenAlex 18.2%
  11. 2024 Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes‐associated HLA‐B39 allotypes European Journal of Immunology DOI 10.1002/eji.202350683 YÖKSİS SJR Q1 JCR Q2 OpenAlex 62.1%
  12. 2024 Surface plasmon resonance, molecular docking, and molecular dynamics simulation studies of lysozyme interaction with tannic acid Food Science & Nutrition DOI 10.1002/fsn3.4315 YÖKSİS SJR Q1 JCR Q2 OpenAlex 68.1%
  13. 2024 Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline OMICS: A Journal of Integrative Biology DOI 10.1089/omi.2024.0121 YÖKSİS SJR Q3 JCR Q3 OpenAlex 59.0%
  14. 2023 Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach JOURNAL OF MOLECULAR GRAPHICS & MODELLING DOI 10.1016/j.jmgm.2022.108382 YÖKSİS SJR Q2 JCR Q1 OpenAlex 59.7%
  15. 2023 A review on the mechanistic details of OXA enzymes of ESKAPE pathogens PATHOGENS AND GLOBAL HEALTH DOI 10.1080/20477724.2022.2088496 YÖKSİS SJR Q2 JCR Q1 OpenAlex 64.0%
  16. 2022 How Epstein-Barr virus envelope glycoprotein gp350 tricks the CR2? A molecular dynamics study Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2022.108196 YÖKSİS SJR Q2 JCR Q2 OpenAlex 55.1%
  17. 2022 Assessment of 13 in silico pathogenicity methods on cancer-related variants Computers in Biology and Medicine DOI 10.1016/j.compbiomed.2022.105434 YÖKSİS SJR Q1 JCR Q1 OpenAlex 84.6%
  18. 2022 Systems biomarkers for papillary thyroid cancer prognosis and treatment through multi-omics networks Archives of Biochemistry and Biophysics DOI 10.1016/j.abb.2021.109085 YÖKSİS SJR Q1 JCR Q1 OpenAlex 84.9%
  19. 2022 Hydration modulates oxygen channel residues for oxygenation of cysteine dioxygenase: Perspectives from molecular dynamics simulations Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2021.108060 YÖKSİS SJR Q2 JCR Q2 OpenAlex 34.3%
  20. 2022 Epistatic effects between amino acid insertions and substitutions mediate toxin-resistance of vertebrate Na+, K+-ATPases Mol Biol Evol DOI 10.1093/molbev/msac258 YÖKSİS SJR Q1 JCR Q1 OpenAlex 72.4%

Projects 16 See all (16) →

  1. 2021 Rasyonel tasarım ile corynbacterium glutamicum'un L-dopa üretimi için bir mikrobiyel hücre fabrikasına dönüştürülmesi ve L-dopa üretim prosesinin geliştirilmesi Uluslararası İkili İşbirliği Programları · Tamamlandı 2021-04-01 – 2024-10-01
  2. 2020 Tip 4 pili protein kompleksinin inhibisyonu ve inhibisyon dinamiğinin karakterizasyonu -Tübitak 1001 · Tamamlandı 2020-08-01 – 2024-02-01
  3. 2020 Peptidlerle ilişkili bağışıklık sistemi proteinlerinin çalışma mekanizmalarının aydınlatılması TÜSEB · Tamamlandı 2020-04-27 – 2022-07-27
  4. 2019 Kolorektal kanserinde farklılaşan protein-protein etkileşimleri üzerinden ilaç repozisyonu -Tübitak 1002 · Tamamlandı 2019-09-19 – 2021-06-18
  5. 2019 Protein yapılarının Ağ Analizi için Web tabanlı bir Araç Geliştirilmesi MARMARA ÜNİVERSİTESİ -Tübitak 1002 · Tamamlandı 2019-04-01 – 2020-05-21

Books 2

  1. 2021 PROTEİN: YAPISI, MÜHENDİSLİĞİ, ETKİLEŞİMLERİ, DİNAMİĞİ VE İLAÇ TASARIMINDAKİ YERİ Ankara Nobel Tıp Kitabevleri ISBN 9786257564038 Kitap Bölümü · Bilimsel Kitap
  2. 2019 In Silico Drug Design Elsevier ISBN 9780128163771 Kitap Bölümü · Bilimsel Kitap

Proceedings 58 See all (58) →

  1. 2007 Plane stress rapid fracture resistance of pipe grade PE Estimation from tensile drawing data ANTEC Conference Proceedings
  2. 2019 Ailesel Meme Kanseri Hastalarında BRCA1ve BRCA2 Genlerinin Yeni Nesil DizilemeYöntemi ile Dizilenmesi ve TelomerUzunluğuyla İlişkisi 16.Tıbbi Biyoloji ve Genetik Kongresi
  3. 2017 Investigation of Peptide Binding Affinity andThermalStability ofHuman Leukocyte Antigens (HLAs) 19th UIPAB congress and 11th EBSA congress
  4. — Construction of allosteric residue networks in caspase-7 using energy perturbation responses International Symposium on Chemistry via Computation Applications on Molecular Nanoscience
  5. 2019 Exploring dynamics of pMHCusing accelerated molecular dynamics 7th International Bahçeşehir University (BAU) Drug Design Congress

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Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
184
With an akaturk profile
29
Turkish institutions
15
Co-authored works
%98

Academic co-authors 29

  1. ONUR SERÇİNOĞLU Doktor Öğretim Üyesi · Gebze Teknik Üniversitesi 12
  2. BERNA SARIYAR AKBULUT Profesör · Marmara Üniversitesi same university 6
  3. ILGAZ TAŞTEKİL ŞEN Araştırma Görevlisi · Sağlık Bilimleri Üniversitesi 6
  4. EMİR ALPER TÜRKOĞLU Doçent · Sağlık Bilimleri Üniversitesi 4
  5. FATMA GİZEM AVCI Doçent · Üsküdar Üniversitesi 4
  6. ASLI BAYSAL Profesör · İstanbul Teknik Üniversitesi 3
  7. HASAN SAYGIN Profesör · İstanbul Aydın Üniversitesi 3
  8. KAZIM YALÇIN ARGA Profesör · Marmara Üniversitesi same university 3
  9. METİN YAZAR Doktor Öğretim Üyesi · İstanbul Okan Üniversitesi 3
  10. ZEHRA ÖZLEM KESKİN ÖZKAYA Profesör · Koç Üniversitesi 3
Show all (29)
  1. CEYDA KASAVİ Doçent · Marmara Üniversitesi same university 2
  2. CEYDA KULA Doktor Öğretim Üyesi · Marmara Üniversitesi same university 2
  3. FATMA ECE ALTINIŞIK KAYA Doktor Öğretim Üyesi · Marmara Üniversitesi same university 2
  4. FATMA TOKAT Doçent · Acıbadem Mehmet Ali Aydınlar Üniversitesi 2
  5. GÖKÇE GÜLLÜ AMURAN Doktor Öğretim Üyesi · Marmara Üniversitesi same university 2
  6. GÜVEN YENMİŞ Doçent · Hatay Mustafa Kemal Üniversitesi 2
  7. AHU SOYOCAK Doçent · İstanbul Aydın Üniversitesi 1
  8. CANSU YAY Araştırma Görevlisi · Gebze Teknik Üniversitesi 1
  9. DAMLA DEMİREL Araştırma Görevlisi · Trabzon Üniversitesi 1
  10. GÜLAÇTI TOPÇU Profesör · Bezm-İ Âlem Vakıf Üniversitesi 1
  11. HALİL İBRAHİM ÖZDEMİR Doçent · Ege Üniversitesi 1
  12. MEHMET KAHRAMAN Profesör · Gaziantep Üniversitesi 1
  13. MEHMET TALHA TINASTEPE Araştırma Görevlisi · Samsun Üniversitesi 1
  14. MUSTAFA AKKİPRİK Profesör · Marmara Üniversitesi same university 1
  15. MÜFİDE AYDOĞAN AHBAB Profesör · Sağlık Bilimleri Üniversitesi 1
  16. SEFA ŞAHİN Araştırma Görevlisi · Samsun Üniversitesi 1
  17. SELEN EMİRHANOĞLU Araştırma Görevlisi · Marmara Üniversitesi same university 1
  18. TUBA KUŞMAN SAYĞI Doktor Öğretim Üyesi · Van Yüzüncü Yıl Üniversitesi 1
  19. İLYAS KARASU Profesör · Samsun Üniversitesi 1

National collaboration 15 institutions

Within own university13 joint works · Marmara Üniversitesi

  1. Gebze Teknik Üniversitesi 13 works · 2 academics
  2. Sağlık Bilimleri Üniversitesi 6 works · 3 academics
  3. Üsküdar Üniversitesi 4 works · 1 academics
  4. Koç Üniversitesi 3 works · 1 academics
  5. İstanbul Aydın Üniversitesi 3 works · 2 academics
  6. İstanbul Okan Üniversitesi 3 works · 1 academics
  7. İstanbul Teknik Üniversitesi 3 works · 1 academics
  8. Acıbadem Mehmet Ali Aydınlar Üniversitesi 2 works · 1 academics
  9. Hatay Mustafa Kemal Üniversitesi 2 works · 1 academics
  10. Bezm-İ Âlem Vakıf Üniversitesi 1 works · 1 academics
Show all (15)
  1. Ege Üniversitesi 1 works · 1 academics
  2. Gaziantep Üniversitesi 1 works · 1 academics
  3. Samsun Üniversitesi 1 works · 3 academics
  4. Trabzon Üniversitesi 1 works · 1 academics
  5. Van Yüzüncü Yıl Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 155

Turkan Haliloglu 5ASLİHAN ÖZCAN 4Elif Naz Bingol 4Seren Soner 4Emre Apaydın 3Patrick Leevers 3Asuman Bunsuz 2Beste Turanlı 2Esra Başaran 2Evren Gazel Pınar 2Eyüboğlu Peker İrem 2Gizem Gulfidan 2Semra Melis Soyer 2Soumaya Ben Ali Hassine 2hande beklen 2A. W. Peshala AmarajeewaAkiyama YutakaAlveena MukhtiarAmit JaisiAndrew J CrawfordAzé JérômeBaker DavidBates Paul ABernauer JulieBetul Karademir YılmazBonvin Alexandre MJJBourquard ThomasBurak ErmanBush StephenCamacho Carlos JCao LibinCengiz YakicierChen YingChristos ArgyrakisCohen MatiDemerdash Omar NADriggers Camden MELİF NAZ BİNGÖL AKSOYEldin KurpejovicElif Bengü Kızılay

Show all (155)

Emre AbdullahogluEsquivel-Rodríguez JuanEva-Maria StrauchFernández-Recio JuanFleishman Sarel JFouches DenisFİDAN SÜMBÜL YILDIRIMGong XinqiGray Jeffrey JGuharoy MainakGuo DachuanGülin ÖzcanHall Robert GHannah M RowlandHsu Victor LHuan-Xiang ZhouHuang Sheng-YouHuang YangyuHwang HowookInbar YuvalIshida TakashiItzhaki ZoharJacak RonJacob E CornJanin JoelJay F StorzJeanMichel JaultJiang FanJose Ignacio GarzonJosefin StillerJulie C MitchellKanamori EijiKastritis Panagiotis LKerem YalkutKhashan RaedKihara DaisukeKilambi Krishna PKinoshita KengoKo Jun-suKuhlman BrianLee HasupLi ChunhuaLi XiaofanLin LiLiu BinLiu ShiyongLondon NirMUSTAFA CENGİZ YAKICIERMalgorzata A. GarstkaMatsuzaki YuriMelisa soyluMoal Iain HMorgan Jessica LMuhammad TariqMustafa Erhan OzerNakamura HarukiNir BenTalNursena KeskinOhue MasahitoOvalı Şefik KeremPark HahnbeomPeter AndolfattoPetra Peters-WendischPierce Brian GPons CarlesPotapov VladimirPoupon AnnePérez-Cano LauraRobert Charles HSanbo QinSchreiber GideonSchueler-Furman OraSeok ChaokShabnam MohammadiSircar AroopSirin YukselStandley Daron MStranges P BenjaminSusanne DoblerSyed Tarique MoinTakeda-Shitaka MayukoTal Nir BenTerashi GenkiTropsha AlexanderTsuchiya YukoUchikoga NobuyukiVolker F. WendischVreven ThomWang CunxinWang PanwenWeng ZhipingWhitehead Timothy AWodak Shoshana JXiao YiXu RenXu XianjinYang FengYang YuedongYuan DengZacharias MartinZeynep Kutlu KabaşZhan JianZhou YaoqiZou Xiaoqinbatuhan tilkilicedric orelleduygu şentürk karagözhabib burak can erdonmezqianyu Wangrasim murat aydınkalrok frlansema arslansimay cungurtihomir tomasicŞİRİN YÜKSEL KILIÇTURGAY

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.