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Academician

DENİZ CANSEN KAHRAMAN

Öğretim Görevlisi (uygulamalı Birim)

Orta Doğu Teknik Üniversitesi Rektörlük

Research topics OpenAlex
  1. Ana Dal Fen Bilimleri ve Matematik Temel Alanı
  2. Yan Dal Moleküler Biyoloji ve Genetik
Keywords YÖKSİS
Articles 31 YÖKSİS 31 · OpenAlex 0 Total citations 845 h-index 15 · OpenAlex OpenAlex coverage %97 matched 30 / 31 Q1 articles 22 Scopus · WoS Q1 19 Best field rank #81 / 765 Side field · top 10.6% Co-authors 69 7 Turkish institutions

Citation impact

Citation counts of the articles matched in OpenAlex, citing publications from Crossref and the Stanford/Elsevier list. Sources are shown separately and never added up.

OpenAlex YÖKSİS articles matched in OpenAlex: 30 + YÖKSİS · co-author record: 1
h-index 15 Percentile in Türkiye: 94 #145 of 1,012 at their university by h-index
i10-index
20
Total citations
845
Top 6.1% in Türkiye
Per article
27.3
FWCI
2.34
1.00 = world average
World top 1%
0
World top 10%
9

Most cited articles

  1. MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery 2021 world top 10% 124 citations
  2. Near-IR Absorbing BODIPY Derivatives as Glutathione-Activated Photosensitizers for Selective Photodynamic Action 2014 world top 10% 122 citations
  3. Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment 2019 world top 10% 108 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. 1 articles (2 citations) tagged with this academic’s YÖK author id in co-authors’ YÖKSİS records count only towards citations, h-index and i10; article counts, percentiles and rankings use their own YÖKSİS list. h-index on the OpenAlex author profile: 23.

Citing publications Crossref 181 publications citing 30 DOI-bearing articles · 30 Türkiye-affiliated
  • 2018 3
  • 2019 28
  • 2020 49
  • 2021 60
  • 2022 27
  • 2025 12
  • 2026 2
  1. DOI 10.1016/j.ejmech.2026.118730 2026 · cites 3 articles of this academic
  2. DOI 10.1016/j.ejmech.2025.118449 2026 · cites 2 articles of this academic
  3. Trifluoromethyl–pyrazole–carboxamides as COX inhibitors: synthesis, microed structural analysis, computational profiling, and biological evaluation TR Mohammed Hawash et al. · BMC Chemistry · 2025
  4. ECLIPSE: Exploration of Complex Ligand-Protein Interactions through Learning from Systems-level Heterogeneous Biomedical Knowledge Graphs TR Heval Atas Guvenilir et al. · 2025
  5. DOI 10.1155/jimr/3037744 2025
  6. DOI 10.3389/fonc.2025.1607249 2025
  7. DOI 10.1111/cbdd.70183 2025
  8. DOI 10.3389/fimmu.2025.1704868 2025
  9. DOI 10.3390/mps8060143 2025
  10. DOI 10.1002/cbic.202500706 2025
  11. DOI 10.1007/s44442-025-00047-5 2025
  12. DOI 10.1080/17568919.2025.2602420 2025 · cites 2 articles of this academic
  13. DOI 10.1021/acsomega.5c06977 2025
  14. DOI 10.1016/j.jpha.2025.101508 2025
  15. Learning functional properties of proteins with language models TR Serbulent Unsal et al. · Nature Machine Intelligence · 2022
  16. Design and synthesis of novel substituted indole-acrylamide derivatives and evaluation of their anti-cancer activity as potential tubulin-targeting agents TR Mohammed Hawash et al. · Journal of Molecular Structure · 2022 · cites 3 articles of this academic
  17. Context dependent isoform specific PI3K inhibition confers drug resistance in hepatocellular carcinoma cells TR Kubra Narci et al. · BMC Cancer · 2022
  18. DOI 10.1016/j.actbio.2021.10.006 2022
  19. DOI 10.1002/slct.202104429 2022
  20. DOI 10.1016/j.matpr.2020.08.044 2022
  21. DOI 10.1007/s10700-021-09376-7 2022
  22. DOI 10.1002/wcms.1597 2022
  23. DOI 10.1016/j.tox.2022.153154 2022
  24. DOI 10.3233/mgc-220019 2022
  25. DOI 10.1016/j.bioorg.2021.105568 2022
  26. DOI 10.3390/cancers14061455 2022
  27. DOI 10.1016/j.drudis.2022.02.023 2022
  28. DOI 10.1002/jgh3.12730 2022
  29. DOI 10.1109/tcbb.2021.3121275 2022
  30. DOI 10.1016/j.comptc.2022.113632 2022

Showing the 30 most recent.

Where does this list come from?

Extracted from the reference lists in Crossref’s public March 2026 data file; 20.3% of the file has been processed, so the list may be incomplete. Crossref citations are never added to or compared with the OpenAlex citation counts; the two sources have different coverage.

Field ranking

Position in the main-field, side-field and keyword cohorts by YÖKSİS article score; each card opens that ranking.

YÖKSİS ?
Keyword rankings 1

Works 31

YÖKSİS and OpenAlex records: index distribution, journals published in, a filterable article list and the other output types.

Indexes and citation percentiles

?
TR Index 1 articles
OpenAlex citation percentile
Top 1%0
Top 10%11
Avg · n 33 %77.8
Other counts

Scopus (SJR)

  • YÖKSİS rows 37

WoS (JCR)

  • YÖKSİS rows 37

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

31articles

Journals with publications

22 journals

Narrow down

Scopus (SJR)
Q122 Q26 Q32 Q40
WoS (JCR)
Q119 Q26 Q34 Q41
TR Index
1articles

Article list

  1. 2025 Target-specific de novo design of drug candidate molecules with graph-transformer-based generative adversarial networks Nature Machine Intelligence DOI 10.1038/s42256-025-01082-y YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 94.3%
  2. 2024 Design, synthesis, and evaluation of novel Indole‐Based small molecules as sirtuin inhibitors with anticancer activities Drug Development Research DOI 10.1002/ddr.70008 YÖKSİS SJR Q2 JCR Q1 OpenAlex 82.0%
  3. 2023 Design, synthesis, molecular docking studies and biological evaluation of thiazole carboxamide derivatives as COX inhibitors. BMC chemistry DOI 10.1186/s13065-023-00924-3 YÖKSİS OpenAlex top 10% OpenAlex 97.5%
  4. 2023 Novel Indole-Pyrazole Hybrids as Potential Tubulin-Targeting Agents; Synthesis, antiproliferative evaluation, and molecular modeling studies. Journal of molecular structure DOI 10.1016/j.molstruc.2023.135477 YÖKSİS SJR Q2 JCR Q2 OpenAlex top 10% OpenAlex 93.6%
  5. 2022 Design and synthesis of novel substituted indole-acrylamide derivatives and evaluation of their anti-cancer activity as potential tubulin-targeting agents JOURNAL OF MOLECULAR STRUCTURE DOI 10.1016/j.molstruc.2022.132345 YÖKSİS SJR Q2 JCR Q2 OpenAlex top 10% OpenAlex 92.2%
  6. 2022 Context dependent isoform specific PI3K inhibition confers drug resistance in hepatocellular carcinoma cells BMC CANCER DOI 10.1186/s12885-022-09357-y YÖKSİS SJR Q1 JCR Q2 OpenAlex 69.3%
  7. 2022 Low Density Granulocytes and Dysregulated Neutrophils Driving Autoinflammatory Manifestations in NEMO Deficiency JOURNAL OF CLINICAL IMMUNOLOGY DOI 10.1007/s10875-021-01176-3 YÖKSİS SJR Q1 JCR Q1 OpenAlex 57.8%
  8. 2022 A new triazolothiadiazine derivative inhibits stemness and induces cell death in HCC by oxidative stress dependent JNK pathway activation SCIENTIFIC REPORTS DOI 10.1038/s41598-022-17444-0 YÖKSİS SJR Q1 JCR Q2 OpenAlex 64.2%
  9. 2021 MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery Bioinformatics DOI 10.1093/bioinformatics/btaa858 2 YÖKSİS records YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 98.1%
  10. 2021 Synthesis and biological evaluation of novel isoxazole-piperazine hybrids as potential anti-cancer agents with inhibitory effect on liver cancer stem cells. European journal of medicinal chemistry DOI 10.1016/j.ejmech.2021.113489 YÖKSİS SJR Q1 JCR Q1 OpenAlex 86.2%
  11. 2021 Transcriptome profiles associated with selenium-deficiency-dependent oxidative stress identify potential diagnostic and therapeutic targets in liver cancer cells TURKISH JOURNAL OF BIOLOGY DOI 10.3906/biy-2009-56 YÖKSİS TR Index SJR Q2 JCR Q2 OpenAlex 4.7%
  12. 2021 Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools JOURNAL OF GASTROINTESTINAL CANCER DOI 10.1007/s12029-021-00768-x YÖKSİS SJR Q3 JCR Q4 OpenAlex 61.2%
  13. 2021 Synthesis of novel indole-isoxazole hybrids and evaluation of their cytotoxic activities on hepatocellular carcinoma cell lines BMC CHEMISTRY DOI 10.1186/s13065-021-00793-8 YÖKSİS SJR Q2 JCR Q2 OpenAlex top 10% OpenAlex 93.3%
  14. 2021 Induction of Apoptosis in Hepatocellular Carcinoma Cell Lines by Novel Indolylacrylamide Derivatives: Synthesis and Biological Evaluation CHEMISTRY & BIODIVERSITY DOI 10.1002/cbdv.202001037 YÖKSİS SJR Q2 JCR Q3 OpenAlex 72.9%
  15. 2020 CXXC5 as an unmethylated CpG dinucleotide binding protein contributes to estrogen-mediated cellular proliferation SCIENTIFIC REPORTS DOI 10.1038/s41598-020-62912-0 2 YÖKSİS records YÖKSİS SJR Q1 JCR Q1 OpenAlex 77.7%
  16. 2019 Synthesis, anticancer activity, toxicity evaluation and molecular docking studies of novel phenylaminopyrimidine-(thio)urea hybrids as potential kinase inhibitors COMPUTATIONAL BIOLOGY AND CHEMISTRY DOI 10.1016/j.compbiolchem.2018.12.003 2 YÖKSİS records YÖKSİS SJR Q3 JCR Q3 OpenAlex 80.6%
  17. 2019 Targeting PI3K/Akt/mTOR Pathway Identifies Differential Expression and Functional Role of IL8 in Liver Cancer Stem Cell Enrichment MOLECULAR CANCER THERAPEUTICS DOI 10.1158/1535-7163.MCT-19-0004 2 YÖKSİS records YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 95.5%
  18. 2019 A NEW THIADIAZINE DERIVATIVE INDUCES OXIDATIVE STRESS DEPENDENT CELL DEATH IN HEPATOCELLULAR CARCINOMA STEM CELLS HEPATOLOGY YÖKSİS SJR Q1 JCR Q1
  19. 2019 A new thiadiazine derivative induces oxidative stress dependent JNK pathway activation and cell death in hepatocellular carcinoma CANCER RESEARCH DOI 10.1158/1538-7445.SABCS18-995 YÖKSİS SJR Q1 JCR Q1
  20. 2019 In silico modeling and in vitro validation of undefined off-target of drugs in hepatocellular carcinoma CANCER RESEARCH DOI 10.1158/1538-7445.SABCS18-996 YÖKSİS SJR Q1 JCR Q1

Projects 6 See all (6) →

  1. 2014 Karaciğer Kanseri Kök Hücre Ksenograft Modelinde Sitotoksik Aktiviteli Yeni İlaç Adaylarının Etkilerinin Belirlenmesi COST · Tamamlandı 2014-01-01 – 2017-01-01
  2. 2016 Meme ve Karaciğer Kanserinin Tedavisi İçin PI3K/AKT Sinyal Yolunu Hedefleyen Yeni Aday İlaç Molekül Geliştirme ve Ön Klinik Çalışmaları -Tübitak 1003 · Tamamlandı 2016-01-04 – 2019-10-01
  3. 2021 Az Biyoaktif Bileşik Verisi Olan Proteinlere Karşı Sanal Tarama Için Derin Öğrenme Modelleri (Azderin) -Tübitak 1001 · Tamamlandı 2021-10-01
  4. 2020 Derin Öğrenme Bazlı Farmakogenomik Modelleme ile Geniş Çaplı Kanser Hücre Hattı İlaç Yanıt Tahmini TÜSEB · Tamamlandı 2020-06-01
  5. 2020 Hepatosellüler Kansere Özgü Ctdna Tayini Için Düşük Enerji Ile Uyarılabilen Ve Çoklu Analize Olanak Sağlayan Mikroakışkan Tabanlı Ve Üst-Çevirici Nanopartikül-Kuantum Nokta Hibrid Yapılı Fotoelektrokimyasal Sensörün Geliştirilmesi -Tübitak 1001 · Tamamlandı 2020-06-15

Proceedings 25 See all (25) →

  1. 2013 Enrichment of cancer stem cell characteristics of liver cancer cells by prolonged drug selection and identification of cytotoxic activity of new drug candidates International Multidisciplinary Symposium on Drug Research and Development (DRD2013)
  2. 2014 Biological Evaluation of New Pyrazole Derivatives for Novel Therapeutic Opportunities of Hepatocellular Carcinoma MolBiyoKon 2014
  3. 2019 Abstract 996: In silico modeling and in vitro validation of undefined off-target of drugs in hepatocellular carcinoma AACR Annual Meeting 2019
  4. 2015 Bioactivities of small molecule kinase inhibitors in liver cancer stem cells COST Action CM1106 3rd Working Group Meeting
  5. 2024 Deciphering Transcriptional Landscapes of Mild and Advanced MASLD Fibrosis: Insights into Differential Gene Expression, Pathway Enrichment, and Drug Repurposing Opportunities 17th International Symposium on Health Informatics and Bioinformatics

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Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
69
With an akaturk profile
17
Turkish institutions
7
Co-authored works
%100

Academic co-authors 17

  1. SULTAN BAYTAŞ Profesör · Gazi Üniversitesi 8
  2. ABDURRAHMAN OLĞAÇ Doktor Öğretim Üyesi · Gazi Üniversitesi 3
  3. AHMET SÜREYYA RİFAİOĞLU Doktor Öğretim Üyesi · Hacettepe Üniversitesi 3
  4. BİRSEN TOZKOPARAN KÖPRÜCÜ Profesör · Hacettepe Üniversitesi 3
  5. EBRU BİLGET GÜVEN Doktor Öğretim Üyesi · Kadir Has Üniversitesi 3
  6. SEZEN GÜNTEKİN ERGÜN Öğretim Görevlisi (uygulamalı Birim) · Hacettepe Üniversitesi 3
  7. TUNCA DOĞAN Profesör · Hacettepe Üniversitesi 3
  8. ERDEN BANOĞLU Profesör · Gazi Üniversitesi 2
  9. NURCAN TUNÇBAĞ Doçent · Koç Üniversitesi 2
  10. ASLI TÜRE Doktor Öğretim Üyesi · Marmara Üniversitesi 1
Show all (17)
  1. AYBAR CAN ACAR Doktor Öğretim Üyesi · Orta Doğu Teknik Üniversitesi same university 1
  2. BURCU ÇALIŞKAN Profesör · Gazi Üniversitesi 1
  3. BÜŞRA BINARCI Araştırma Görevlisi · Orta Doğu Teknik Üniversitesi same university 1
  4. ENGİN UMUT AKKAYA Profesör · İhsan Doğramacı Bilkent Üniversitesi 1
  5. YEŞİM ÖZKAN Profesör · Gazi Üniversitesi 1
  6. ÖZLEN KONU KARAKAYALI Profesör · İhsan Doğramacı Bilkent Üniversitesi 1
  7. İLKAY KÜÇÜKGÜZEL Profesör · Fenerbahçe Üniversitesi 1

National collaboration 7 institutions

Within own university2 joint works · Orta Doğu Teknik Üniversitesi

  1. Gazi Üniversitesi 10 works · 5 academics
  2. Hacettepe Üniversitesi 10 works · 4 academics
  3. Kadir Has Üniversitesi 3 works · 1 academics
  4. Koç Üniversitesi 2 works · 1 academics
  5. İhsan Doğramacı Bilkent Üniversitesi 2 works · 2 academics
  6. Fenerbahçe Üniversitesi 1 works · 1 academics
  7. Marmara Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 52

RENGÜL ATALAY 28MOHAMMED M. A HAWASH 4ESRA NALBAT 3TAMER KAHRAMAN 3AHMET ENİS ÇETİN 2Andrej Boháč 2GILLES HANQUET 2MEHMET VOLKAN ATALAY 2AHMET ATAKANATABERK DÖNMEZAlessandra SilvaniDAMLA GÖZENERNEST HAMELEnsar Korkut KılıçFatma Pir-ÇakmakFİKRİYE ERENGAMZE AYAZGabriela AddováGennaro PescitelliGiordano LesmaGiovanni GraziosoGİZEM KARSHEVAL ATAŞHUMA SHEHWANAJuraj DobiašKÜBRA NARCIKÜBRA İBİŞLoïc JeanmartMARIA MARTINMAYDA GÜRSELMESUT MUYANMOHAMMAD CHAREHSAZMargaréta VojtičkováMattia StucchiMichael S. ChristodoulouMohammad TofighiNAZAN İNCELERNEGİN RAZİZADEHNİLÜFER NERMİN TURAN DURALOnur Yorulmaz

Show all (52)

PELİN YAŞARPERİ AYTAÇPeter ŠramelSERDAR ÇAKIRSEVİM PERİ AYTAÇSilvia CairatiSteve LannersSİNEM HELVACIOĞLUÖZGE SAATCİÖZGÜR ŞAHİNİHSAN GÜRSELİLKE ŞİMŞEK TURAN

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.