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Academician

ÖZNUR TAŞTAN OKAN

Doçent

Sabancı Üniversitesi Mühendislik Ve Doğa Bilimleri Fakültesi Bilgisayar Bilimi Ve Mühendisliği Bölümü

Research topics OpenAlex
  1. Ana Dal Mühendislik Temel Alanı
  2. Yan Dal Bilgisayar Bilimleri ve Mühendisliği
Keywords YÖKSİS
Articles 34 YÖKSİS 34 · OpenAlex 0 Total citations 939 h-index 16 · OpenAlex OpenAlex coverage %100 matched 34 / 34 Q1 articles 24 Scopus · WoS Q1 25 Best field rank #188 / 3,782 Side field · top 5.0% Co-authors 146 5 Turkish institutions

Citation impact

Citation counts of the articles matched in OpenAlex, citing publications from Crossref and the Stanford/Elsevier list. Sources are shown separately and never added up.

OpenAlex YÖKSİS articles matched in OpenAlex: 34 + YÖKSİS · co-author record: 2
h-index 16 Percentile in Türkiye: 95 #44 of 213 at their university by h-index
i10-index
21
Total citations
939
Top 5.6% in Türkiye
Per article
26.1
FWCI
1.81
1.00 = world average
World top 1%
1
World top 10%
5

Most cited articles

  1. MatchMaker: A Deep Learning Framework for Drug Synergy Prediction 2022 world top 1% 172 citations
  2. Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins 2010 153 citations
  3. Integromic Analysis of Genetic Variation and Gene Expression Identifies Networks for Cardiovascular Disease Phenotypes 2015 world top 10% 71 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. 2 articles (43 citations) tagged with this academic’s YÖK author id in co-authors’ YÖKSİS records count only towards citations, h-index and i10; article counts, percentiles and rankings use their own YÖKSİS list. h-index on the OpenAlex author profile: 20.

Citing publications Crossref 209 publications citing 34 DOI-bearing articles · 20 Türkiye-affiliated
  • 2017 1
  • 2019 33
  • 2020 75
  • 2021 51
  • 2022 18
  • 2023 2
  • 2024 2
  • 2025 25
  • 2026 2
  1. DOI 10.1016/j.compbiolchem.2025.108736 2026
  2. DOI 10.1109/tcbbio.2025.3646049 2026
  3. DOI 10.64898/2025.12.05.25340137 2025
  4. DOI 10.1109/ijcnn64981.2025.11228449 2025
  5. DOI 10.1007/978-3-031-90450-9_3 2025
  6. DOI 10.1134/s0022093025060080 2025
  7. DOI 10.2142/biophysico.bppb-v22.0031 2025
  8. DOI 10.1093/bib/bbaf676 2025
  9. DOI 10.1016/s1875-5364(25)60903-4 2025
  10. DOI 10.1021/acsomega.5c06314 2025
  11. DOI 10.1109/ijcnn64981.2025.11229051 2025
  12. DOI 10.1109/ijcnn64981.2025.11228113 2025
  13. DOI 10.7554/elife.108882.2 2025
  14. DOI 10.1021/acsomega.5c07349 2025
  15. DOI 10.1109/icesc65114.2025.11212498 2025
  16. DOI 10.1109/ijcnn64981.2025.11227938 2025
  17. DOI 10.1093/bib/bbaf687 2025
  18. DOI 10.1093/bib/bbaf683 2025
  19. DOI 10.1093/bib/bbaf624 2025
  20. DOI 10.1007/s12539-025-00779-3 2025
  21. DOI 10.1016/j.ailsci.2025.100147 2025
  22. DOI 10.1109/apeie66761.2025.11289323 2025
  23. DOI 10.1016/s1875-5364(25)60967-8 2025
  24. DOI 10.1101/2025.10.20.683485 2025
  25. DOI 10.1101/2025.10.21.683733 2025
  26. DOI 10.1016/j.tjpad.2025.100366 2025 · cites 2 articles of this academic
  27. DOI 10.1038/s44386-025-00034-1 2025
  28. DOI 10.1093/bioadv/vbaf269 2024
  29. DOI 10.1093/bioadv/vbaf289 2024
  30. DOI 10.1109/jbhi.2021.3126339 2023

Showing the 30 most recent.

Where does this list come from?

Extracted from the reference lists in Crossref’s public March 2026 data file; 20.3% of the file has been processed, so the list may be incomplete. Crossref citations are never added to or compared with the OpenAlex citation counts; the two sources have different coverage.

Field ranking

Position in the main-field, side-field and keyword cohorts by YÖKSİS article score; each card opens that ranking.

YÖKSİS ?
Keyword rankings 2

Works 34

YÖKSİS and OpenAlex records: index distribution, journals published in, a filterable article list and the other output types.

Indexes and citation percentiles

?
TR Index 2 articles
OpenAlex citation percentile
Top 1%1
Top 10%4
Avg · n 34 %67.9
Other counts

Scopus (SJR)

  • YÖKSİS rows 31

WoS (JCR)

  • YÖKSİS rows 31

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

34articles

Journals with publications

20 journals

Narrow down

Scopus (SJR)
Q124 Q27 Q30 Q40
WoS (JCR)
Q125 Q22 Q34 Q40
TR Index
2articles

Article list

  1. 2026 One-hot news: drug synergy models shortcut molecular features BIOINFORMATICS DOI 10.1093/bioinformatics/btag040 YÖKSİS SJR Q1 JCR Q1 OpenAlex 7.4%
  2. 2025 FlyVISTA, an integrated machine learning platform for deep phenotyping of sleep in Drosophila Science Advances DOI 10.1126/sciadv.adq8131 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 98.6%
  3. 2025 SCITUNA: single-cell data integration tool using network alignment BMC Bioinformatics DOI 10.1186/s12859-025-06087-3 YÖKSİS OpenAlex 66.1%
  4. 2025 DARKIN: a zero-shot benchmark for phosphosite-dark kinase association using protein language models BIOINFORMATICS DOI 10.1093/bioinformatics/btaf480 YÖKSİS SJR Q1 JCR Q1 OpenAlex 17.6%
  5. 2024 From cell lines to cancer patients: personalized drug synergy prediction Bioinformatics DOI 10.1093/bioinformatics/btae134 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 90.5%
  6. 2023 MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing Bioinformatics DOI 10.1093/bioinformatics/btad592 YÖKSİS SJR Q1 JCR Q1 OpenAlex 41.6%
  7. 2023 Vapor Sensing of Colorectal Cancer Biomarkers in Isolation by Bare and Functionalized Nanoelectromechanical Sensors IEEE Sensors Journal DOI 10.1109/JSEN.2023.3300797 YÖKSİS SJR Q1 JCR Q1 OpenAlex 51.4%
  8. 2023 Focusing on potential named entities during active label acquisition Natural Language Engineering DOI 10.1017/S1351324923000165 YÖKSİS SJR Q1 JCR Q1 OpenAlex 77.3%
  9. 2022 Discovering misannotated lncRNAs using deep learning training dynamics Bioinformatics DOI 10.1093/bioinformatics/btac821 YÖKSİS SJR Q1 JCR Q1 OpenAlex 72.6%
  10. 2022 Uncovering complementary sets of variants for predicting quantitative phenotypes Bioinformatics DOI 10.1093/bioinformatics/btab803 YÖKSİS SJR Q1 JCR Q1 OpenAlex 60.2%
  11. 2022 MatchMaker: A Deep Learning Framework for Drug Synergy Prediction IEEE/ACM Transactions on Computational Biology and Bioinformatics DOI 10.1109/TCBB.2021.3086702 YÖKSİS SJR Q2 JCR Q1 OpenAlex top 1% OpenAlex 99.3%
  12. 2022 PHACT: Phylogeny-Aware Computing of Tolerance for Missense Mutations Molecular Biology and Evolution DOI 10.1093/molbev/msac114 YÖKSİS SJR Q1 JCR Q1 OpenAlex 75.6%
  13. 2022 A Weakly Supervised Clustering Method for Cancer Subgroup Identification Balkan Journal of Electrical and Computer Engineering DOI 10.17694/bajece.1033807 YÖKSİS TR Index OpenAlex 35.4%
  14. 2022 GEGE: Predicting Gene Essentiality with Graph Embeddings Düzce Üniversitesi Bilim ve Teknoloji Dergisi DOI 10.29130/dubited.1028387 YÖKSİS TR Index OpenAlex 47.4%
  15. 2021 NoRCE: non-coding RNA sets cis enrichment tool BMC Bioinformatics DOI 10.1186/s12859-021-04112-9 YÖKSİS SJR Q1 JCR Q2 OpenAlex 48.9%
  16. 2021 PRER: A patient representation with pairwise relative expression of proteins on biological networks PLOS Computational Biology DOI 10.1371/journal.pcbi.1008998 YÖKSİS SJR Q1 JCR Q1 OpenAlex 3.6%
  17. 2021 A Tool for Detecting Complementary Single Nucleotide Polymorphism Pairs in Genome-Wide Association Studies for Epistasis Testing Journal of Computational Biology DOI 10.1089/cmb.2020.0430 YÖKSİS SJR Q2 JCR Q3 OpenAlex 66.3%
  18. 2021 miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests IEEE/ACM Transactions on Computational Biology and Bioinformatics DOI 10.1109/TCBB.2020.3047901 YÖKSİS SJR Q2 JCR Q1 OpenAlex 34.7%
  19. 2021 SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS IEEE/ACM Transactions on Computational Biology and Bioinformatics DOI 10.1109/TCBB.2019.2935437 YÖKSİS SJR Q2 JCR Q1 OpenAlex 84.6%
  20. 2021 Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection Journal of Computational Biology DOI 10.1089/cmb.2020.0429 YÖKSİS SJR Q2 JCR Q3 OpenAlex 67.5%

Projects 8 See all (8) →

  1. 2018 Fonksiyonel Çizge Çekirdekleri ile Kanser Hasta Altgruplarının keşfi -Tübitak 3501 · Tamamlandı 2018-06-01 – 2021-12-01
  2. 2020 Nadir Hastalık Tanısında Yanlış Anlam Mutasyon Etkisi Tahmin Platformu TÜSEB · Tamamlandı 2020-09-01
  3. 2021 Nesnelerin İnterneti Uygulamaları için Gerilim, Sıcaklık ve Üretimsel Sapmaları Dikkate Alarak Yüksek Enerji Verimliliği ve Çıkarım Doğruluğuna Sahip Derin Öğrenme Ağları Geliştirilmesi TÜBİTAK PROJESİ · Tamamlandı 2021-10-01
  4. 2020 Mideye girmiş mikro-RNA'lardan yemek alerjisi için yeni biyobelirteç ve risk faktörlerin belirlenmesi TÜSEB · Tamamlandı 2020-06-01
  5. 2020 Kanser miRNA Terapileri için Sinerjistik Çalışan miRNA Tespit Platformu TÜSEB · Tamamlandı 2020-06-01 – 2022-06-01

Proceedings 22 See all (22) →

  1. — Alternative paths in HIV-1 targeted human signal transduction pathways Eighth International Conference on Bioinformatics (InCoB2009)
  2. 2022 Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors The 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB)
  3. 2021 DeepSide: A Deep Learning Approach for Drug Side Effect Prediction PharML 2021 Machine Learning for Pharma and Healthcare Applications Workshop at ECML/PKDD 2021
  4. 2009 Prediction Of Interactions Between Hiv-1 And Human Proteins By Information Integration Pacific Symposium on Biocomputing 2009
  5. 2015 Refining Literature Curated Protein Interactions Using Expert Opinions Pacific Symposium on Biocomputing 2015

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Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
146
With an akaturk profile
10
Turkish institutions
5
Co-authored works
%100

Academic co-authors 10

  1. ABDULLAH ERCÜMENT ÇİÇEK Doçent · İhsan Doğramacı Bilkent Üniversitesi 8
  2. GÜLDEN OLGUN Doktor Öğretim Üyesi · Hacettepe Üniversitesi 4
  3. BURÇAK OTLU SARITAŞ Doktor Öğretim Üyesi · Orta Doğu Teknik Üniversitesi 2
  4. OGÜN ADEBALİ Doçent · Sabancı Üniversitesi same university 2
  5. AISSA HOUDJEDJ Araştırma Görevlisi · Antalya Bilim Üniversitesi 1
  6. BAŞAR BİLGİÇ Profesör · İstanbul Üniversitesi 1
  7. EMİNE AYŞE SUNAR Araştırma Görevlisi · Sabancı Üniversitesi same university 1
  8. HAŞMET AYHAN HANAĞASI Profesör · İstanbul Üniversitesi 1
  9. HİLAL KAZAN Profesör · Antalya Bilim Üniversitesi 1
  10. RAMAZAN GÖKBERK CİNBİŞ Doçent · Orta Doğu Teknik Üniversitesi 1

National collaboration 5 institutions

Within own university3 joint works · Sabancı Üniversitesi

  1. İhsan Doğramacı Bilkent Üniversitesi 8 works · 1 academics
  2. Hacettepe Üniversitesi 4 works · 1 academics
  3. Orta Doğu Teknik Üniversitesi 3 works · 2 academics
  4. Antalya Bilim Üniversitesi 1 works · 2 academics
  5. İstanbul Üniversitesi 1 works · 2 academics

Other co-authors (incl. international) 136

HALIL IBRAHIM KURU 5Judith Klein-Seetharaman 5Sunduz Keles 4Ali Osman Berk Şapçı 3Afshan Nabi 2ERMAN AYDAY 2Gizem Çaylak 2MEHMET KOYUTÜRK 2Serhan Yılmaz 2YASİN TEPELİ 2İman Deznabi 2A. J RaderA. Nazli BasakALİ BURAK ÜNALAlagarsamy SrinivasanAlar AabAnes ArefAnuradha MehtaArpana DuttaAslihan Ozoguz ErimisAtakan B. AriAylin BircanAysun SoysalBeate RueckertBerke DilekogluBrian H ChenBurak Onur ErtenBüşra ArabacıCESİM ERTENCakar ArmanCan FırtınaCaroline S FoxCasey BrodyCavit BozCemile KocogluCemre CoskunCenk YanıkCeren TuncaCezmi AkdişChen Yao

Show all (136)

Christin LeChristopher J. O'DonnellChunyu LiuDaniel LevyDilcan KotanDuygu OzcelikEMRAH AKKOYUNEce KartalElif BayraktarEmine Beyza CandırErdi SahinErsen KavakErsin TanEsra Baar GursoyEsther YuFerhat AyFeza DeymeerFikret AysalFiliz KocFulya AkcimenGulce KaleGulsen Babacan YildizHANDE ALİBAŞHANDE ALİBAŞ KÜÇÜKKAYAHacer DurmusHagai MeirovitchHalil IdrisogluHamid HamzeiyHasan KemikJaime G CarbonellJames B MeigsJane E FreedmanJason WatsonL. Adrienne CupplesLeah A. WalkerMERT PEKEYMUSTAFA FURKAN AKDEMİRMadhavi GanapathirajuMagnus RattrayMark N. WuMatti WarisMehmet Ali AkalinMehmet Fatih KeleşMehmet KelleciMehmet Selim HanayMohamad FakhouriMohammad MobayenMubeccel AkdisMustafa BüyüközkanMustafa ErtasNURDAN KURUNarasimhan J VenkatachariNaveena YanamalaNazanin JafariNesli Ece SenNilda TurgutNurten Uzun AdatepeOZGUR SAHINOguzhan KarakahyaOlli RuuskanenOnur DereliOscar PalomaresPaul CourchesnePaula BoothPeter J MunsonPiraye OflazerReyyan YeniterziRiina NieminenRobin PalvadeauRoby JoehanesRonald C MontelaroSeyit ZorShahin AhmadiShan LuShuchen YanSuleyman Onur DoganTahsin AkgunTero VahlbergThien LeTianxiao HuanTimothy M. DempseyTobias AllanderTuncay SekerTuomas JarttiTuomo PuhakkaTytti VuorinenUtku NormanVelpandi AyyavooXiaoling ZhangYacine MaroufYaming LiYanjun QiYesim ParmanZEYNEP IŞIKÇağatay Karakanİsmet İnönü Kaya

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.