Genetics, Bioinformatics, and Biomedical Research

In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's website. NCBI resources include Entrez, PubMed, PubMed Centra…

• TUĞBA SÜZEK

UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a…

• TUNCA DOĞAN

UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a…

• TUNCA DOĞAN

UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a…

• BARIŞ ETHEM SÜZEK

This study aims to explore the usage of Open-source software in bibliometric analysis. Biblio-metrix an R package for bibliometric and co-citation analysis was used to achieve the research activities. R is an ecosystem software meaning all functions are shared in an open-source environment with the users. We have used…

• HAMİD DERVİŞ

The identification of interactions between drugs/compounds and their targets is crucial for the development of new drugs. In vitro screening experiments (i.e. bioassays) are frequently used for this purpose; however, experimental approaches are insufficient to explore novel drug-target interactions, mainly because of…

• AHMET SÜREYYA RİFAİOĞLU
• TUNCA DOĞAN

BACKGROUND: The UniProt consortium was formed in 2002 by groups from the Swiss Institute of Bioinformatics (SIB), the European Bioinformatics Institute (EBI) and the Protein Information Resource (PIR) at Georgetown University, and soon afterwards the website http://www.uniprot.org was set up as a central entry point t…

• BARIŞ ETHEM SÜZEK

In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, the Entrez Programming Utili…

• TUĞBA SÜZEK

The authors Rabie Saidi and Tunca Dogan were omitted from the list of the UniProt consortium in the acknowledgements section of this paper. The corrected consortium list is provided below. UniProt has been prepared by Rolf Apweiler, Alex Bateman, Maria Jesus Martin, Claire O'Donovan, Michele Magrane, Yasmin Alam–Faruq…

• TUNCA DOĞAN

Our era has witnessed tremendous advances in plant genomics, characterized by an explosion of high-throughput techniques to identify multi-dimensional genome-wide molecular phenotypes at low costs. More importantly, genomics is not merely acquiring molecular phenotypes, but also leveraging powerful data mining tools t…

Microbes and their activities have pervasive, remarkably profound and generally positive effects on the functioning, and thus health and well-being, of human beings, the whole of the biological world, and indeed the entire surface of the planet and its atmosphere. Collectively, and to a significant extent in partnersh…

• ZEYNEP CEREN KARAHAN

Traditional technologies using reductionist approach are relatively insufficient to solve problems in a biological system. Rather than a reductionist approach, systems biology uses a holistic and integrative approach to better figure out the whole process. Both qualitatively and quantitatively of biological system pro…